rs27954818 SNP Detail

Summary

• ID
  rs27954818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73823409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACTGCT CAGTAAGGAC
  CTGCATCGTG TGTCCTTTCC AAACTCCTGG GCTGAAACCC CAACCCCTTA GGTCTCAGTG
  TGTGTGGGTG GGTATAGGGA TTTTAAAGAG GTGAGTGAAT GGAGAGTCTC CCCAGTCTAG
  TCAACGCACA TGCACAAGCA CGCACCATCC CCACAAACAG TGCCTATGTG CATCGATGTG
  Y
  GTGTATATGC ATGTATGAGC ATGCTCACTG AGGACTGAAA TTAACCTTGC ATGCTTTCCT
  CCATCACACT CTATTATATT TGTTAAAGAA GGGCCTTTTG CCGAAACCAG GACCCACCAG
  CCAATTAAGA TTAGTCAGTC TAGCCATTTT GCCCTGGAGA TATCCTGTTT TTGTTTCCTG
  AGTTCTGGGA TTACAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38115437	NES09279283	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	T		T
ss320346311	CHEV_2_73831122	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27954818					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115437	NES09279283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73823409 () rs orientation: forward

Symbol	Name	Function Class
Rr559269	regulatory region 559269	907 bp distal