rs27954085 SNP Detail

Summary

• ID
  rs27954085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73337697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCATTT AGTATTTAGT
  ATTGAGTATT GAGTATTTAG TGTGTGTGGG TGGGTGGATG AACTATGGAG ATTGGCAGGC
  AGACCTGAGG ACAATCTGAC ACAGCAGGTT TGTATCACAG TGTATGGCTA TCATCAGAAC
  AAGGCAGAGA TGGGCCTGAA GCATGAGTGA GTGACTAAAC CATAAACCAG ACTCCACTAC
  Y
  GCACTGACTG CTCCATCTGA AGTTCTGGCC TCAGGCCTGC CATGCCCACA TCTCTGACGT
  GGCCCTGAAC CTCTCTCCCA CAAGCCCACC CTCACCTTTC CTTAACCGGG ATGTGTGCAG
  CTTTTTCTCA CCGCAGGACT GTTGCTTGCC TCTGCCTGAC ATATTTTCCC CGGATGTCAT
  GTGCCTGGTC CCTGGTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38116604	NES09272431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27954085					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38116604	NES09272431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73337697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr559170	regulatory region 559170			676 bp distal
Rr559171	regulatory region 559171			234 bp distal
Rr559172	regulatory region 559172			1683 bp proximal
Wipf1	WAS/WASL interacting protein family, member 1			Intron
				Noncoding-Transcript-Variant