rs27954080 SNP Detail

Summary

• ID
  rs27954080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73338628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCACA CTGGGGAAAT
  GTGTCACCTG ACCTCACCCC AGGTAACCGT CCACATCAGA GGCAGAAAGG GAGGCCTCCT
  TCGGCTCTGT CTCCTGGATG GTAATTCAGC TGGAAGCCTC AAGAAAAACC GGAAGCCGGA
  ACTGAGCCAT CTCTGCTCAG CACCGCAGAG AATCTAACAG CTCTACCTAC AGATGTGGAC
  Y
  GCTCAAGACC TTCTCATCTG GTTTCTGTAG AGTGAGGAAA TCCATACATA TCAAACCTCA
  GCTAATTCCG AGCATCCTGA GGTGAGGGCC AGCCATAGAA GGCTCTGATG CCCTGTATGA
  AGAATCTCCA GCCCTCCCGG GTAGCAGCCC AGACTCACTG TAAACGTGTG CTCCGTCTGA
  CGGGAACAGG AGGGTGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38116599	NES09272399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27954080					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38116599	NES09272399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73338628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr559170	regulatory region 559170			1607 bp distal
Rr559171	regulatory region 559171			1165 bp distal
Rr559172	regulatory region 559172			752 bp proximal
Wipf1	WAS/WASL interacting protein family, member 1			Intron
				Noncoding-Transcript-Variant