rs27954068 SNP Detail

Summary

• ID
  rs27954068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73340494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGACTC CTCAGCCTTG
  AAACCTGCTA GTGCTACAGC GGTCCTAGAT GCAGTGAGAA GATGCCAGGA AAATCAGGAC
  CCTCTTTCCC ACAGAAACCT ACCACGTATA AACCAGGCTG ACAGAAGCCT GCGTTAGGTC
  ATCCGGAATG TTGACCTTGG AAGGAAAGCT CAGCCCAGCT CAAAAGAGCA GCTTTGGACA
  R
  TCAGGATATG ATGACCAATA CACACACATT CATTTGCTTC ACATTTGTAC ACACACACAC
  AAAACACACA CCTTCAGCCC AAAAGCATTT GGGTAGTTCT GGTATATGAC CCTAACTTTT
  CTGTCCCTTT CTCTGCTACA TTGATCAAGT GTGTCAAACT GTCCTTCAAA TAAACACTTC
  ATTAGCAACA CTGATCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38116587	NES09272359	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	A	A	G		A
ss320345330	CHEV_2_73348207	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27954068					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38116587	NES09272359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73340494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr559172	regulatory region 559172			42 bp distal
Rr559173	regulatory region 559173			1933 bp proximal
Wipf1	WAS/WASL interacting protein family, member 1			Intron
				Noncoding-Transcript-Variant