rs27954067 SNP Detail

Summary

• ID
  rs27954067
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73340918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATATA GATAGTATTA
  TACAGAGAGA TATAATTAAA AACATCACGA TTCTGGTTGA AAGCATTAAA CAACTCGCTT
  CCCTTTTCTT TTCTTTCCTC TGTGTTGGAT GTATGTGGTG CTGGTGTTGA ACCCAGGGCC
  TCAGACTTCA GGGCAGGTAC TTGAGACATA GCCCTTGCTC AACAGAACGA TGCAACAACA
  S
  TTATTGAATA CCTACATAAG AGACACGAAA TTAGAGACAT AACACGGCCT GCATCCTATA
  ACATGGCTCC TGCTCAGGGA CTCTGAATAA AGCATCATTT ATGTGTCTAT GTCACTATAA
  AGTCATACTG TCTTCAGACA TAATACCATG GCAATTATCA CACACACATT AGACCAGAGG
  CAACCATAAA CTATGAACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38116586	NES09272361	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G		C	G	G	C		G
ss320345331	CHEV_2_73348631	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27954067					SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38116586	NES09272361	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73340918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr559172	regulatory region 559172			466 bp distal
Rr559173	regulatory region 559173			1509 bp proximal
Wipf1	WAS/WASL interacting protein family, member 1			Intron
				Noncoding-Transcript-Variant