rs27950358 SNP Detail

Summary

• ID
  rs27950358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73109084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATAACAT TCTTAACACA
  TTAAAAAAAA CTGAAAACTC TGATTTGCTT TTATGTTTGA CAGTAGCTCT TGATTCCCCC
  AAGAGGCGCA CGGCGAGTGC GGCTCTCTGG CGCCATCTAG AGCTCCTGCA TAGGAGTCCG
  CGCTGTCGGC CTGGTGCTTG GCTTTTAGCG CTTGGAGACC TGCTTCTGTC GAGAACTCTG
  R
  CAGCCAAGGA ATCAGGCAAA GAAAAGCGAG GTTTAGTGTT TTAGCTGGGG ACAAGCCCCG
  TTTTGAGGGG ACATTGCCTA GCAATGGCTC CAAAGGAAGG GGATTATTTC TGAAACACAC
  TTACTGAAAA ATCCAAGCAA AACAGACTAC CACCTCGCTT GGCCCTGGAC CCAGCTTTCT
  TTCATTGTCT CATTTAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38117484	NES09272530	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27950358					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117484	NES09272530	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73109084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11769	CpG island 11769	712 bp distal
Cpgi11770	CpG island 11770	within coordinates
Cpgi11771	CpG island 11771	1863 bp proximal
Rr406574	regulatory region 406574	1556 bp distal
Rr559121	regulatory region 559121	291 bp distal
Rr559122	regulatory region 559122	within coordinates
Rr559123	regulatory region 559123	73 bp distal
Rr559124	regulatory region 559124	1499 bp proximal