rs27950356 SNP Detail

Summary

• ID
  rs27950356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73109116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTCTG ATTTGCTTTT
  ATGTTTGACA GTAGCTCTTG ATTCCCCCAA GAGGCGCACG GCGAGTGCGG CTCTCTGGCG
  CCATCTAGAG CTCCTGCATA GGAGTCCGCG CTGTCGGCCT GGTGCTTGGC TTTTAGCGCT
  TGGAGACCTG CTTCTGTCGA GAACTCTGGC AGCCAAGGAA TCAGGCAAAG AAAAGCGAGG
  Y
  TTAGTGTTTT AGCTGGGGAC AAGCCCCGTT TTGAGGGGAC ATTGCCTAGC AATGGCTCCA
  AAGGAAGGGG ATTATTTCTG AAACACACTT ACTGAAAAAT CCAAGCAAAA CAGACTACCA
  CCTCGCTTGG CCCTGGACCC AGCTTTCTTT CATTGTCTCA TTTAGCATTC TTTCCTAGGC
  GATTTCAGGG TCTTCCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38117482	NES09272532	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27950356					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117482	NES09272532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73109116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11769	CpG island 11769	744 bp distal
Cpgi11770	CpG island 11770	within coordinates
Cpgi11771	CpG island 11771	1831 bp proximal
Rr406574	regulatory region 406574	1588 bp distal
Rr559121	regulatory region 559121	323 bp distal
Rr559122	regulatory region 559122	within coordinates
Rr559123	regulatory region 559123	105 bp distal
Rr559124	regulatory region 559124	1467 bp proximal