rs27950352 SNP Detail

Summary

• ID
  rs27950352
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73111009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTGCA TTGTTTCGCA
  GGCATCTTGC CACTTCAGGG GCGATTCATT GATGAAAGAA ATGCAGGGAT AGGGTGAGAC
  TCCCTCAGTC CGCTTTCTTT TTGTCAATTG CTAAGAGAGT TGGCATTTTC TTCTTTTGCG
  TCAGGAGCTA GAGATTAGCA TTGGCTTCCC TAAGCGCGGT CTTCACCTGT GGAGCCCTAG
  S
  GAGCAGAAAA ATTCTCTTGC CTTTCAAGGC AAGGCGGGCG AGTGCGTCCT GCGACCCGCG
  CAGGGGACAC ACGAGGGAAG CCGGGCAAGC TTCAGTAGGG ACAGGGAGGC AAGGTCCAGG
  CCCTCGGGGG CGCCGCAGCC TCTCGGAGGG GCCTGGGAGT GTCTTCTGGT TGGGTTTGGG
  CCACCGCGGG CCAGCGCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38117475	NES09272546	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27950352					SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117475	NES09272546	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73111009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11770	CpG island 11770	1264 bp distal
Cpgi11771	CpG island 11771	within coordinates
Rr559122	regulatory region 559122	715 bp distal
Rr559123	regulatory region 559123	1998 bp distal
Rr559124	regulatory region 559124	within coordinates
Rr559125	regulatory region 559125	1275 bp proximal