rs27950349 SNP Detail

Summary

• ID
  rs27950349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73111567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCATCTA CGGATGGCCT
  AGCGACACCT GATCAGCCTA TCCTTTGGGT TCCGTGTGAT ACCCTTTCAA GTGGAGATCT
  GACCGGCTCC GAAGGCCTCG GCACCCCGAA AGCCGCTGCC AGGCAAAGGC CAGAGGTTTT
  CCCTGTCTTG AGTCGCGGGT AGGCGACTAG GCAGTTTGGT CAAATCTATT ACAATCAGAC
  Y
  TTCGCGTCTC AATCCGCACT TCTCTACAGT ATTAGGTGTA TTGTGGGGCT CTGGGGTGCT
  AAGTGTGAGG TGAAGCGAGG AGGGAAGGAA GGTGATAAGA ATTCTCTGCT CCCTTTTCTG
  CCTCAGGAAC CGGGTAGTAG AAAACTTCAA GTCAGGGAAG CGCTCAGTTC TCAGGGCACT
  TTCAGATCTG ACCCTGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38117472	NES09272555	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27950349					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117472	NES09272555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73111567 () rs orientation: forward

Symbol	Name	Function Class
Cir1	corepressor interacting with RBPJ, 1	1878 bp downstream
Cpgi11770	CpG island 11770	1822 bp distal
Cpgi11771	CpG island 11771	within coordinates
Rr559122	regulatory region 559122	1273 bp distal
Rr559124	regulatory region 559124	within coordinates
Rr559125	regulatory region 559125	717 bp proximal