rs27950347 SNP Detail

Summary

• ID
  rs27950347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73111971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCCATT GCAGACTGGT
  TAACACTTGT CCGGAAGTGG TAACTGTAGT AAATGTATCT TCTCAGAAAA CCCAAATAAG
  ATTGAAAGTA TGTGTAAGCC TGCTCCTTGG TCTTCAGCAC AGGGTGTGGA GGACGCGGCC
  TAATTGAGAG GCCTTCACCA GCATCTTGGC CAGTAGGTCA GAAGCATAAA ATTGCCTGTG
  Y
  GGATACTAAA TTTTGTGATT GAAATCGAAA AAAAAACGCC TGCTCCAACA GCGGTACTGA
  TCGGATCCTG TGCCCTCATT GGAAGAAAGA TCTCTCCACA ACCTTTCAGA TAAAAAAAAA
  AGCTTTCTTC ATATTGCAAC TGCATGATAC AAACAAGATC CATGTCACAC TACAAGGTGA
  GCCTTCCTGC TGCAGCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38117470	NES09272558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27950347					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117470	NES09272558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73111971 () rs orientation: forward

Symbol	Name	Function Class
Cir1	corepressor interacting with RBPJ, 1	1474 bp downstream
Cpgi11771	CpG island 11771	373 bp distal
Rr559122	regulatory region 559122	1677 bp distal
Rr559124	regulatory region 559124	within coordinates
Rr559125	regulatory region 559125	313 bp proximal