rs27950342 SNP Detail

Summary

• ID
  rs27950342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73113362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTGTGC TGAGATAGTA
  AAGGATATGG GAAGGAGTTC AGCTCCTCTC TAGTTCCCTT CACGTGCATA ATCAAAGGAC
  TATTTACATC ATAGATGCAG CTACATCACA GGACATCTGT TTGTGTGCAT AGAGAAATAT
  TAGATATGGA ATAGTTTGAA CTCCTTCCAA ATTTATTTTC TTACACTACT TGGAAATTGT
  R
  ATGGCTATCT AAACCATTTT TGTACTAGAC AAAATAAAAA ATAAAACCCT GATTTAAAAA
  AAATACATTC ACAATAGGCA AAAAAGTTTT AGTTGCATAT AATCTGCATT TTTTATTGAA
  AATTTCCATA GTTTTCTCTT CTTCTAATCC TTTGGAACAT ATGGCAAAAT GTATAGCTAA
  GTTTTTAAAA AAAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38117464	NES09272564	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27950342					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117464	NES09272564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73113362 () rs orientation: forward

Symbol	Name	Function Class
Cir1	corepressor interacting with RBPJ, 1	83 bp downstream
Cpgi11771	CpG island 11771	1764 bp distal
Rr559124	regulatory region 559124	1006 bp distal
Rr559125	regulatory region 559125	1057 bp distal