rs27948555 SNP Detail

Summary

• ID
  rs27948555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74031163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCATT TTCACTGGCA
  GAAATATAAA AGACACCAAA CTTCTAGGAA CAAAATTCAG CTAATTGCTA CCAGTTCTTG
  GCTTTTATCT TGTTCTCAAA TTTCAAGGAT TATGGTTACC TGCGCACAGA CAGACTTCAG
  CTCCCTTTGT GTGTAGGATG TCAAGGAAGT TCTATATGAG GAAAACTCTA GAGAATTTCC
  R
  TTTAGAGAGG ATTTTGAGAA AAGTAAAGTG AAACTCTAAA AGATAGTTGA CTTTTTTTTT
  CATTTTAAAA TTTAAAGTTA TGGGTCCCAC TAGTTGGGGT AGACTTGAAA GTCAGAATGG
  CCGTTCAGAA TAGATGGGAC ACAATGCTGA GAGAAGAAAC TGTGCTGGGG ACTCATCGGG
  GACTCATGGG TTCTGTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38114477	NES09269070	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss320346970	CHEV_2_74038876	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27948555					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114477	NES09269070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74031163 () rs orientation: forward

Symbol	Name	Function Class
Gm75409	predicted gene, 75409	within coordinates
Rr559290	regulatory region 559290	894 bp proximal