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rs27948547 SNP Detail
Summary
  • ID
    rs27948547
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:74032070 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGGTCAGGA TTGGGGTGAT
    GACAGCAGCG GCCATAGACG CAGTCACTCA CTTAGCTTGG AAATTCTTTA TTTCCCTGTG
    GACCAATATT TGCAGTGCCT TGTAATGAAG CGAAGTATAA AGAAGTGAAC ATTCCTTCTA
    GGGGCACCTA GCTAAAACAC AGTTTTCAAT CTGTCCTTCC GACCCCTATG CAAATGACAC
    M
    GTTAATAGGC AGCTGTATGC AACACCCCAA AGCCCAAAGG ACCAGACGGA AATTCCTTGA
    ATGCTTGCCT GCGAGCACGC TGGCCTTGGA GAGTCAGCCT TGGCACTCTT CTTGCTGCCT
    TTCTCCACTG CCTATGGTCT TCCCGGCCTG GAGGGGCCAT CATCACCCTT CATTGTCCGG
    GCCCATCATT ACAATATTGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss38114469 NES09269078 PERLEGEN MM_PANEL2 f SNP C C C C C C A C C C A C C A C
ss320346981 CHEV_2_74039783 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27948547 SNP C C C C C C A C C C A A C C A C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38114469 NES09269078 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:74032070 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm31534 predicted gene, 31534 1345 bp upstream
Gm75409 predicted gene, 75409 within coordinates
Rr559290 regulatory region 559290 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory