rs27948543 SNP Detail

Summary

• ID
  rs27948543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74032714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACAGCC TGACACCCAC
  ACTCCCAACT TCCTCCTACT GTATGCCGTT TCTACTGCGC TCTCTGGACC TTTCTTAAGG
  TGGATTTCTC TGTTGGAAGC AGATCATGAT GTGGCCAGCA TCTTTAGAAG TTGGGCTCTT
  TTGTATCTTG TTCTGATTTT TTTTTTTAGA AAGTCCTTTC CTTTGAGTAA CATTTACATT
  Y
  CAGAGAATAT TTTGAATCTG ATTTCAACAA CACTGTCACC CCCTGACACT TTCCAAGTCT
  ATCAAGACTG TATATTTGTG CTTTCATTAT CCCATCATTT GAAGTCGTAG GACTCTCCTC
  CTGTATAGTA GTTCCTCTGT TCACCCAGTT TGAGTGTGCT TGTTACATGT ATGGGGACAC
  ATGGACATTG TAGAACAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38114465	NES09269082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss320346983	CHEV_2_74040427	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27948543					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114465	NES09269082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74032714 () rs orientation: forward

Symbol	Name	Function Class
Gm31534	predicted gene, 31534	701 bp upstream
Gm75409	predicted gene, 75409	within coordinates
Rr559290	regulatory region 559290	195 bp distal