rs27948539 SNP Detail

Summary

• ID
  rs27948539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74033497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTAAC GGCTAAAACC
  AGGAGAACAA TTTGGCAACT CTCCAAGCCC TGCCCTTGTT TAACACTCAC CTCCAGTGTA
  GCAGCCAATT AGTGAAGAGA ATTTAGCCCC TCTCCCTGGA TGCCTTCTTT CAGGTTTTAT
  TCCCTTCTGT TCTTTCTCCT TCTTGCGTTT CCTCCTTTCT CCTTTTAACA TGAAAGTTTA
  R
  CCATCTTACA GTCCCCAGGC TGAACACCAG GCAAATCGAT GACTGTGACT CCACCCTTGT
  ACACAGATTC ACAGTTGCCT GCCCACATTC CTCAGGTATG TCTGAGATTT ATAGGGTTTT
  ATGCCTGGCC AGGGAGCTGA GCTTAATTAA CACTTTCATT TACTTAGCTA ATAGTTAAGG
  CTGATTTGCT TTTATTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38114459	NES09269088	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss320346989	CHEV_2_74041210	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27948539					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114459	NES09269088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74033497 () rs orientation: forward

Symbol	Name	Function Class
Gm31534	predicted gene, 31534	within coordinates
Gm75409	predicted gene, 75409	within coordinates
Rr559290	regulatory region 559290	978 bp distal