rs27944374 SNP Detail

Summary

• ID
  rs27944374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76308203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCCACT ATGCCCAACT
  TTACTTGTTA ATCCTACTAA AGGCATACAA GATTAAAAAT TGAGGAGAAC TCCTTACTAG
  TGACTAGAAT ACACTGATTT CTAGGTTCTA GCACCCTCTG AAGTAGATTA TTAAAAAGCA
  CTAGGGCAGT ACTGGTGTTT TTACACTGCA CTCCCAAGCG ACTGTGGAAA GATGTGGGGC
  Y
  GTCTATAATG TCCAATTATT GTTCAGTTTT CTGGAACAAA ACTTCCCAAG GAGATAGTCT
  TGTGTCATCA ACACCATCTC CCTCACCCCA CGGGGTTAGC TTGAAATTTG GTACAGTTGC
  CTACTTCGGG GTTATCTTCA GTTCTTGCCT CTCACCTTGG TTTCCTTTAT GATACAGTGT
  GTCCTTACAG TCTAGGTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38105494	NES09265191	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27944374					SNP	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38105494	NES09265191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76308203 () rs orientation: forward

Symbol	Name	Function Class
Gm56235	predicted gene, 56235	1360 bp upstream
Osbpl6	oxysterol binding protein-like 6	Intron