rs27944371 SNP Detail

Summary

• ID
  rs27944371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76308763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTGACC TTGGAATTCA
  TCAAGTCTTA GTAGTGCTCT TGTTGTTCAA AGTCTGCCCT TCGATATTTG CCAGGTTTGT
  GCTACAGGAG GGGACAGATG AGGGCCTGGG ATAAGCATCA GGAGGCTTTG TTCCTGCTAC
  CAGTCTCCTG TCTCAGGTGA TGACACAGAC AGTAGTGTAT TCCATTGGCT GACAGACACT
  Y
  GCTCCTCTTT GAGGGCATTG AGGTCGCACA GCCCTGTGAT GAGTTAGAAG AACAGCGTAA
  AAGAGTTGAT GTTTCTGGAA AACCCCACAT ATGGCCTCTT AGAGGAAAGA GCCCTTCCAT
  GACTGGGGTG TGTGGGACTG GAGGGGAAAT AGGGCTTAGA ATGGAACTTT ATGGTTTTGT
  GGAACTGCAA GGCCAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38105491	NES09265194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27944371					SNP	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38105491	NES09265194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76308763 () rs orientation: forward

Symbol	Name	Function Class
Gm56235	predicted gene, 56235	800 bp upstream
Osbpl6	oxysterol binding protein-like 6	Intron