rs27943571 SNP Detail

Summary

• ID
  rs27943571
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77372491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCGGAAT ATACAAATGT
  CCTAGGCAAG GTTAGCATGA ATGGAGTCCA GTATAAAGCT GTTGCAGTTC ATCTAGTTGT
  ATAAATATTT TCAGGAAAAC ATTTATATTA AACAAGAAAA ATGGAAGTAG GCTAATGAAG
  GTAGAGTTCC ATACCTGTTA CTAAAACGTT AAAAGGTTGC AACCAAATCC AAAGAGTGAA
  S
  GACAGAAACA TTCACATTGA TAAAATTACA ATTGAACTAA CTGGTCAAAT AGAAGAACTT
  CTAAGTGACA GGGACTTGGC TTCACTGAAC CTTGCTTGGT TCTTTCTGGA TGGCCCCATT
  CATGTTTCCT GAGCTAGATG GAAAACTGGC TGAAGTGTGT ACGTATAAAA ATAAGTATGT
  GTCTTGATTT TAACACATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38100602	NES09256462	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27943571					SNP	G	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38100602	NES09256462	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77372491 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373396	regulatory region 373396			70 bp upstream
Rr559819	regulatory region 559819			939 bp distal
Rr559820	regulatory region 559820			508 bp proximal
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant