rs27943570 SNP Detail

Summary

• ID
  rs27943570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77372522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATGAA TGGAGTCCAG
  TATAAAGCTG TTGCAGTTCA TCTAGTTGTA TAAATATTTT CAGGAAAACA TTTATATTAA
  ACAAGAAAAA TGGAAGTAGG CTAATGAAGG TAGAGTTCCA TACCTGTTAC TAAAACGTTA
  AAAGGTTGCA ACCAAATCCA AAGAGTGAAG GACAGAAACA TTCACATTGA TAAAATTACA
  R
  TTGAACTAAC TGGTCAAATA GAAGAACTTC TAAGTGACAG GGACTTGGCT TCACTGAACC
  TTGCTTGGTT CTTTCTGGAT GGCCCCATTC ATGTTTCCTG AGCTAGATGG AAAACTGGCT
  GAAGTGTGTA CGTATAAAAA TAAGTATGTG TCTTGATTTT AACACATAAA CATAAAAATA
  TGTAAAAAAA AAAAGCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38100601	NES09256463	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27943570					SNP	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38100601	NES09256463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77372522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373396	regulatory region 373396			39 bp upstream
Rr559819	regulatory region 559819			970 bp distal
Rr559820	regulatory region 559820			477 bp proximal
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant