rs27943567 SNP Detail

Summary

• ID
  rs27943567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77373241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTAAT ACATATCTTC
  AGCCTTCTTT GGGGTTTCTT TGCAGGGGCC CCATGACTAG GTTCTGGCCA ATGAGCTATG
  AATAGCAATG ATTAACTTGC AAGTCATGCC CTTAGACGGA GCATGTGTAC TCCTGTAGAT
  AACTTCCTAT TTGAACTCTG GAATGTGGAA TGAGTGGCGA GTTGAGCCTG CAGAACAGAA
  R
  TGAGGAGCCC AGGGCCCTAT GTGGAAAGAT GTAGTAGTCT GGGTGCCCAT TGCACTGCCC
  CAGCATTCCT GGATTACTGA TGGGACATGA GCCTCTTCAG AGAGCCATTG TGTCCTTGAG
  CAGTCTCACA GTAATTAAAT TGCGCTTTCG TTAAAAGGAG ATTTTGCAAA CTTGTAATAA
  GGCCTCTCTA CCTCAGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38100598	NES09256425	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27943567					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38100598	NES09256425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77373241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373396	regulatory region 373396			within coordinates
Rr559819	regulatory region 559819			1689 bp distal
Rr559820	regulatory region 559820			within coordinates
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant