rs27943564 SNP Detail

Summary

• ID
  rs27943564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77373364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACTCC TGTAGATAAC
  TTCCTATTTG AACTCTGGAA TGTGGAATGA GTGGCGAGTT GAGCCTGCAG AACAGAAGTG
  AGGAGCCCAG GGCCCTATGT GGAAAGATGT AGTAGTCTGG GTGCCCATTG CACTGCCCCA
  GCATTCCTGG ATTACTGATG GGACATGAGC CTCTTCAGAG AGCCATTGTG TCCTTGAGCA
  K
  TCTCACAGTA ATTAAATTGC GCTTTCGTTA AAAGGAGATT TTGCAAACTT GTAATAAGGC
  CTCTCTACCT CAGTTTTGCT GTTCAACCAC AGAAGTCATG CATGGCAGGG ACTCCTCACA
  ATCTCACAGA GGAAGTGGAG AAAACACAAG CTTAACCAAA TATCTTTCCC ATTACATCTT
  TCTCACACTA ACAGACAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss38100595	NES09256428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs27943564					SNP	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38100595	NES09256428	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77373364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373396	regulatory region 373396			within coordinates
Rr559819	regulatory region 559819			1812 bp distal
Rr559820	regulatory region 559820			within coordinates
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant