rs27941864 SNP Detail

Summary

• ID
  rs27941864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75877636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGGGC ATCGGACCCT
  CTGGATCTGG GGTTACAGGT GGTTGTAAGG TACCTGACTT GGGTGCTGGA AACAGAACTC
  AGGTTCTCTG GAAGAGCAGC AAACATTGCT CTTAACTGCA GGCCTTCACT CCAGCCCAGA
  GCTTAATAAA AAGTTTTACA AATACAAACA GATGTCCTGG CAAACAGAGG AGCTAGAAAG
  Y
  GAGTTGCTTC AGGGGAGGCC CACCAAAGAC CACTTTATAA TCTGTTGGGT ATGGAAGGGA
  ACTCTGAAAA CACACAAACT TGTATTGTTT CAGATATGGA AATATGTGGA GAAAAAGTGG
  GCTAGACATT TGGGAATTTT TCTGATCCAG AAACAAATAC TAACTACCTA CTAGTAAAGA
  CTTAGCTGGC ATCCTAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38107685	NES09258308	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T		T
ss320352546	CHEV_2_75885349	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27941864					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107685	NES09258308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75877636 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	561 bp proximal