rs27941861 SNP Detail

Summary

• ID
  rs27941861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75877777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATAAAA AGTTTTACAA
  ATACAAACAG ATGTCCTGGC AAACAGAGGA GCTAGAAAGT GAGTTGCTTC AGGGGAGGCC
  CACCAAAGAC CACTTTATAA TCTGTTGGGT ATGGAAGGGA ACTCTGAAAA CACACAAACT
  TGTATTGTTT CAGATATGGA AATATGTGGA GAAAAAGTGG GCTAGACATT TGGGAATTTT
  Y
  CTGATCCAGA AACAAATACT AACTACCTAC TAGTAAAGAC TTAGCTGGCA TCCTAGAAAT
  CTTTGCTGTG GTGCCAAATG ACTTTGAGGG AGAGAGAGGC CATTAGACAT TAGTTTCTCA
  GTGGGAAGAT TTAGACAATA AAAGCTTTGG GAGCAAATAG AGACATTTTT GGGACTCTAC
  TAACCATTAA TACCTGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107682	NES09258311	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	C	T	T		T
ss320352550	CHEV_2_75885490	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27941861					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107682	NES09258311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75877777 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	420 bp proximal