rs27941858 SNP Detail

Summary

• ID
  rs27941858
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75878030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAATCT TTGCTGTGGT
  GCCAAATGAC TTTGAGGGAG AGAGAGGCCA TTAGACATTA GTTTCTCAGT GGGAAGATTT
  AGACAATAAA AGCTTTGGGA GCAAATAGAG ACATTTTTGG GACTCTACTA ACCATTAATA
  CCTGTTAATG GGAGAGGCCA GAGATGTGGT TAAACAGCGT TCAACACACA GGAGATGCCA
  S
  TCAGAGACCT ACCTCTCCTG AAGAAGTGAG GAACCCTGCA CTGAACTGTC AGGGTGCTTC
  GGTGAAGCGC GTGCTGGATT AAATTCACGG CGCCGGGTAT CTATCTGCTC AACAGCTAGG
  ATGAGGATGC TATTGTCTGG GTGCAGTGAA GCTCTAGTGA TGATTTTTAC CAAAGACTGC
  AATACAGCTT TACCTCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107679	NES09258314	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		C	C	G	C		G
ss320352552	CHEV_2_75885743	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27941858					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107679	NES09258314	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75878030 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	167 bp proximal