rs27941853 SNP Detail

Summary

• ID
  rs27941853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75878228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAGAGA CCTACCTCTC
  CTGAAGAAGT GAGGAACCCT GCACTGAACT GTCAGGGTGC TTCGGTGAAG CGCGTGCTGG
  ATTAAATTCA CGGCGCCGGG TATCTATCTG CTCAACAGCT AGGATGAGGA TGCTATTGTC
  TGGGTGCAGT GAAGCTCTAG TGATGATTTT TACCAAAGAC TGCAATACAG CTTTACCTCA
  Y
  GCTACCAGAG AGCACTCTTG TTCTCTCCAG AAGCCGGCTC ACTTGGCAGC CATACCCCCT
  TGTTAGTGAA ACGGGAAACC CTTCGGCAGT GTCACTGTCA TTGACTTCAG GTACTTGCCA
  AGTCGGGCTT CTTTGATCTG CTTTTCTTAG CATGAAAAAT GAACTCACAA GCATATGTGG
  CCTGGCTGGG AAGTGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38107674	NES09258319	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T		C
ss320352558	CHEV_2_75885941	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27941853					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107674	NES09258319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75878228 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	within coordinates
Rr559638	regulatory region 559638	1832 bp proximal