rs27938860 SNP Detail

Summary

• ID
  rs27938860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76885370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCATTAC CCTTCGGCTT
  ATCCATCTAT TACGGATATT AATTGAACTT GTACTGAGAA TTTCCTCAAT CAAAGAAAGG
  TGTAACTTTC AGAATTCCAA AAAGGAAGGG AAAAAAGGCA CTTGAATCTG AAAGCCATCT
  CCAGCCCTTC CTTGGCTCTG TCCAAAGCTG AAGACCTTTT GTTCTGGTGC TTAAGGTAGA
  Y
  GCATAATGCC CCGGGGACAT AGAGAATCAA GACCCAGTAA GCAGTTTACG GCTCCTGAGA
  TGTGTTGTGC TGGGACTCTG GGCTCCTCGG TCCATGGTAG AACTCTTGAA AGCTCCTAGC
  AAGCCTAGCT TACAATGCTT GAACTCTCAG CTCCAGCTTT TAGAGCTTCC CTGTCTCTTG
  GCTTCTCAGA CTTTTCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38102679	NES09258276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27938860					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38102679	NES09258276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76885370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc141	coiled-coil domain containing 141			Intron
				Noncoding-Transcript-Variant
Gm75155	predicted gene, 75155			1899 bp upstream
Rr559739	regulatory region 559739			1322 bp proximal