rs27935577 SNP Detail

Summary

• ID
  rs27935577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63288961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTGGGGC TGGGGCTGGG
  GGCGCAGCAG CCAGGTACCA GAGTCCAGGG GCCATTCGTA CTGGCGAGCC CGTCTGCCTG
  TTCTTCCGTT TGAGGATGGG GGTGGAAGGC TTTTTGGGGG TGTTCTTCTC TGCAAGGGAA
  GGAAAGACAG AGAAATTACA TGAGGACTTA GATGCAGCCA AGCACGGTGG GTCAGCCAGC
  Y
  ACCCCTGCAC TTGTGGCTGA TGGGCAGTGG AGGACCACCC TAGGGAGGGC ATCCCTCTGG
  GATGTTGAGC CTCTGTTGCA TTTATTTTGC TCTAGCGGAG CTTACAGCAT CCCCAAGGTC
  TGGCCAAGCC CCGTGGCTGA AGAAAGATGC TGAGGGCTCA TTCCTACCAG AGGGACCTGA
  GCTGGAGCCA TCTGCTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053301	NES09390819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27935577					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053301	NES09390819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63288961 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Rr593531	regulatory region 593531	1683 bp distal
Rr593532	regulatory region 593532	1936 bp distal
Rr593533	regulatory region 593533	1349 bp proximal