rs27935571 SNP Detail

Summary

• ID
  rs27935571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63289786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGGAGT CCAGAAGAGG
  GAAATCTGGG TCAGTGAAAG GTCAAAGGAA CATTTCAGAC ATCCACTGTG GTCCCTGCCT
  GAGCATCAGA CTTGCTTTTC AGGCCACTCT TGGCCAGCAC ATCCTCTGGG AACTGCCCAC
  AGCCTTGGTC TGTGTTGGCC CTGACCACTC TGCTTTGATG CTGGCTCCTT GGAGACAATA
  Y
  TGGTGGGCAC TGAGCAAGAG AGTAAATGAG TGAATTGGAA AGTCTGTCAG GACATCGATC
  CATGGTGGGG AGGGGCCAGT GCTCCGGAGC ATAAAGACCT GAGTTCAAAT GTTGGCTCTA
  TCACTTGTAA ACTGTGTGCC TTTGAGCAAG TTACTCTCCT CTCATAAAAT AGTCTGTGTT
  CAGCTCTAAT AAAACTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053295	NES09390773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27935571					SNP	C	C	C	C	C	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053295	NES09390773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63289786 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Rr593533	regulatory region 593533	524 bp proximal
Rr593534	regulatory region 593534	1658 bp proximal