rs27931216 SNP Detail

Summary

• ID
  rs27931216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50194254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAACTCT TCAAAGGAGG
  TGGGAATTTC TACATTTCAC AAAGAAATTA AGTGGATCTC AGATACAGAG TGAACTGCCA
  GATGCCACAG AGCTACGTGC GTTGAGGAAT CTGAAATTTG AACTTGGGTT TGTGTGCTTT
  CAAAACTTCC ATTTTGTCTA TGAGAACAAA ACTGAGGAGT GGAGAGGAAA GGAGGGTGAA
  Y
  GGCTCTGTCT AGTGTTAGTC CAGTTTGTCC TTGCTTGTCC GTGGTAGGGT GAATCTTACC
  AGGGATTCAC GGAGCTCTAA AGGTTGATCA AAGTCCCAGG TGATGAGATT ATTCCGACAC
  TAATATGCAA TCCGTGAGGT TTTCTTTTGC ATCTTCCCTC GAAGCTGTTT GTATCAATGC
  CTTCTGATCA ACATATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38082138	NES09339684	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C	T
ss146531258	ENSMUSSNP1007997	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27931216					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082138	NES09339684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50194254 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	693 bp proximal
Rr556733	regulatory region 556733	1043 bp proximal
Tssr17697	transcription start site region 17697	950 bp downstream