rs27931214 SNP Detail

Summary

• ID
  rs27931214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50194317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAGTGA ACTGCCAGAT
  GCCACAGAGC TACGTGCGTT GAGGAATCTG AAATTTGAAC TTGGGTTTGT GTGCTTTCAA
  AACTTCCATT TTGTCTATGA GAACAAAACT GAGGAGTGGA GAGGAAAGGA GGGTGAACGG
  CTCTGTCTAG TGTTAGTCCA GTTTGTCCTT GCTTGTCCGT GGTAGGGTGA ATCTTACCAG
  R
  GATTCACGGA GCTCTAAAGG TTGATCAAAG TCCCAGGTGA TGAGATTATT CCGACACTAA
  TATGCAATCC GTGAGGTTTT CTTTTGCATC TTCCCTCGAA GCTGTTTGTA TCAATGCCTT
  CTGATCAACA TATGGGCTCC TTTCCTTCTA GAGAAGACCA AGTCTCAATA AGGAAGGGTG
  CACACACACT TAAGCAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38082136	NES09339686	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	A
ss146531261	ENSMUSSNP6784123	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27931214					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082136	NES09339686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50194317 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	630 bp proximal
Rr556733	regulatory region 556733	980 bp proximal
Tssr17697	transcription start site region 17697	1013 bp downstream