rs27922961 SNP Detail

Summary

• ID
  rs27922961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64722191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCTATG CTTATTTTTT
  TTTTTAAGAG AAGGATCACT ATAGTAATGT CACAGAGTTG ACATGAGGGT AAAATGACAT
  AATTAATATT TAGTCCTCGT TCAGGGCAGG ACACCTGGTT GTGTTTCTGT CAAACAAATT
  CCCTCTCCAT CAAGTGGAAC AAGGGACTGA GAGGCTGCTG GACATCAGGA GCAAGAAGCA
  R
  GCTGTCAGTG GTAGAACATA ACAATTTATA AATTTCTTAT TTCACAACAA ACCATGGGAC
  ATTCATCGTC CATGGAAATA CACAAGTACT GAGACTGGGG CTGGTTCCCA GCCAGAGTCC
  AACGCAAATG TACCTGAATG ACTAACGTGT GCTGTATGAC TCACCCGTCC CTGACTGCAA
  TCTGGGTCCA TCTGCTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38048304	NES09388769	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27922961					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38048304	NES09388769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64722191 () rs orientation: forward

Symbol	Name	Function Class
Rr593669	regulatory region 593669	17 bp proximal
Rr593670	regulatory region 593670	1157 bp proximal