rs27922958 SNP Detail

Summary

• ID
  rs27922958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64722521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCTGAAT GACTAACGTG
  TGCTGTATGA CTCACCCGTC CCTGACTGCA ATCTGGGTCC ATCTGCTGAG CAGAGCCACA
  TACGCCCAGG GAGGGCCAGG GAGGGTTGCA GGCCTCTTTG GAAGAGGAAG TTCTGCTTAT
  TCTTAAGCTG AGTTAGGCAA AAGGCTGATA ATTAGTATTT ATCAGCCTCC GTGAGAGGCC
  R
  GCAAGTTTTT CTATACATAG TTTCAGGCTG TCCTGGGACT GTTCCCGTTT TAGCAGAAAG
  GAAGCCCCAT TCCAGTTAAG GTACAAGAGA CTTTCCCCAG ACCTCATAGA CAGACTCTGT
  GCTGGCTACT TCTATGTCAA CATGACTCAG TCTACAATCA TCGGAGAGAA GGGTATCTCA
  CCTGAAAAAA AAAATCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38048301	NES09388772	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27922958					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38048301	NES09388772	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64722521 () rs orientation: forward

Symbol	Name	Function Class
Rr593669	regulatory region 593669	within coordinates
Rr593670	regulatory region 593670	827 bp proximal