rs27922955 SNP Detail

Summary

• ID
  rs27922955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64723376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAAACAT CACATACTGG
  TGGGTTCTCA GACACATGCA TTTTGACTTT GGTTGCTAAA CTACTTACTG TGCTCTTTTG
  TCTGTCCTGA TCTTCTGAAT CCTTCCTTAC AAGAATTAAG CTCGACAGTG ATGAGAATAT
  GTCCTGCCTT TCACACACAT CATCTCACTG GATTCTGTTG ACCAGCTATA AACCTTGTTC
  W
  TGCTGAAATT AGAAGCCAGC CTGAAAGCTA GGTCTCCAAG CTGGCACACA GCCAAAGTTT
  CTCATCATGC AGTTTCAGAG GAATGTGAGC CCCTAGCGCA TAAGGTTCCC TTTCAAAACC
  AACTCACAAA ATTGTAATCC TGTTATTAGT GTCAGCAGTG GACTTAGGAC TGTAGCACAT
  AGCAGATCAC CAATAATAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38048298	NES09388754	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27922955					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38048298	NES09388754	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64723376 () rs orientation: forward

Symbol	Name	Function Class
Rr593669	regulatory region 593669	782 bp distal
Rr593670	regulatory region 593670	within coordinates