rs27922247 SNP Detail

Summary

• ID
  rs27922247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64447022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGAGCC CTTGGTTTGC
  TCCCCAGCAC TGCCTAACAT GGGATGTTGT TGACTCATGC ATGTAATCCT AGTACTCAGG
  AGGTAGAATT GGGCAAAGCA GCACTTCAGG GCCGTATTTG ATTACAGAAT GAATTCACAA
  TCAGTCTGGC TACATAAGAA CATGCCTCAA CAAAAAGAAG GAAGTTTAAT TCTAAGTACT
  Y
  CCCAAAGCAG AGACAATGTA GTACATTTTC TTAACACAGT TTCTTTTCAT TTTGAAGATG
  CAACTAAGCT GTCTTTCTCA ACTTTCATTG CAATTGATTG ACAGTATGTA AGGAACATGA
  GAAGTTATGA ATGCTACTTC AAAGCTTAGC CTCTAAATCT TTCAAGTTAA CCTTTATACA
  CTCCCCTTTC CATTGTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38049177	NES09398264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27922247					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38049177	NES09398264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64447022 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	1887 bp proximal
Rr593664	regulatory region 593664	1966 bp proximal