rs27922244 SNP Detail

Summary

• ID
  rs27922244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64447714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATGTC ATAGATTGAG
  GAGACTATAT CTGGATTGTG TTAGAGAATC CATCGTTTAC TGTAGAATGA AAGTTGACAT
  CAGCAAATAT TGTCAAGGAA AAGAAGAAGT TGCTATTGCC ATTGATTTAG TACCTGAAGG
  TAAGGGAAAA TTTACCTTAC CATGGCTACA TTTCTTTTAG AATGAGGAAT TACTGATTTA
  Y
  TTTTGGCATA ACTTATGTGG GTCAAGTAAT ATGCAAAAAT AAGTAGTCTT TAGGCCCTGT
  TCAGAAAGTT TTCCTGAAGG AAGAAAATAC CTTAACTCAA AGACTTGTAG TACAATCATG
  CATGGATGTC CAAAGAATGA AAGCAATTCT CCAGAGAGCT CTCAAAATAG AGCTAGAGAA
  GGCTAGAGTC AAGGAAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38049174	NES09398220	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27922244					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38049174	NES09398220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64447714 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	1195 bp proximal
Rr593664	regulatory region 593664	1274 bp proximal