rs27922234 SNP Detail

Summary

• ID
  rs27922234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64449530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTTCA CCAAGGGAAA
  AGAGATCAAA GTGTTTGCTA TCAACAAAAC TATTCTTCCC TCCCTCTATG GACAGAAGAA
  TAAATCACAA TTAAAGGAGC CGAGAACCTT TAAAAGTGCA GACTTCTTTA CTTAAAGGAA
  CATACAACTC CTCAAATGTA GATATAAATA AAACACACTT GACAAGTAGA AGGAAACTAT
  R
  AATAAACTGA GTAGATGCAA ACAATAGAAA GAAATTCCGT TGACTTATAG CTTTCTGATG
  AATTGCTTGA TTTGGTAGAT CATTTCTCTT GCCAAGTTTC TACTCTACTA TCTTTTCAAT
  GACTGAGAAG ATGTCTAGTT TTCATGTTCG AAGTTCGAAG AAAATAGTTC ACATGCAAAT
  CTAGGGGCAT CACAGCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38049164	NES09398103	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27922234					SNP	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38049164	NES09398103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64449530 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	400 bp distal
Rr593664	regulatory region 593664	521 bp distal
Rr593665	regulatory region 593665	1800 bp proximal
Rr593666	regulatory region 593666	1951 bp proximal