rs27922230 SNP Detail

Summary

• ID
  rs27922230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:64449798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTGGTA GATCATTTCT
  CTTGCCAAGT TTCTACTCTA CTATCTTTTC AATGACTGAG AAGATGTCTA GTTTTCATGT
  TCGAAGTTCG AAGAAAATAG TTCACATGCA AATCTAGGGG CATCACAGCA CAAAAGTGTA
  CCTCAAAAGA AAACTAGGTT TGGGGGAGAA AAAGAAAGAC TACCTCTCTA TTGTCTTTGA
  Y
  CTCACAGTAG GATAAATGAC AGTTTTGTAG TACATCAAGC ATACTGAAGC CCCAGTTCTG
  TCCTCTTCCA GTTACATGAA TTTGGAGTTG TCACTAATCC ACATTTGCCT ATGTACTTTT
  TTTCCTTGAA AAAAAAAAAG AGCTAGAGAG ATAGCTCATT TAAAGTGCTT GCCTTGCAAG
  GATGAGGGAC TGAGTTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38049160	NES09398107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27922230					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38049160	NES09398107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:64449798 () rs orientation: forward

Symbol	Name	Function Class
Rr593663	regulatory region 593663	668 bp distal
Rr593664	regulatory region 593664	789 bp distal
Rr593665	regulatory region 593665	1532 bp proximal
Rr593666	regulatory region 593666	1683 bp proximal