rs27920564 SNP Detail

Summary

• ID
  rs27920564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63291573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACACTG CCTCAGTAAA
  TAAAGTGGGG AGTGATCAAG AAAGACAGCA GACTATGAGG ACACACAAGC ACATGAACCA
  CATGCCCACA CACACACACA CACACACACA CACACACGGT AAATATCAGC CAAGGGCTGA
  GGATGGGACT CCGTGATTGA GCGTGTGTTG AGTGTGCACA AGCTCACCTG TGTATTGACC
  Y
  CGGAAGGAAA CTCTTTCCCT CCGCTTCGAG CTGCTCTGTG GTCTTGTCCC CCACTGTGCA
  GCCTCGGGGT GCTCCTCAAA GGTCCTGCTC TTCTCAGATG AGAGCCGAGG GGCAGGCGAC
  TCCGATTCAG AACCTGTGGT GGGAGTGGAG CCTCAGAGGG GGCAGGTGTG GGGCTCACGT
  GGAGGGCGGG GCTCAGGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053288	NES09390678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27920564					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053288	NES09390678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63291573 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Coding-Synonymous
Gm69532	predicted gene, 69532	361 bp upstream
Rr593533	regulatory region 593533	1242 bp distal
Rr593534	regulatory region 593534	within coordinates
Rr593535	regulatory region 593535	1138 bp proximal