rs27920562 SNP Detail

Summary

• ID
  rs27920562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63291814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG GGACCAAGGG CACCTCCTGA
  W
  TCTCAGCCTG GAGCCCTGTG GCTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053286	NES09390681	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	T	T	T	A	T	A	T	T	T
ss45575270	mCV24480232	ABI	CRAMUS_MOUSE	f	SNP		A	T					T
ss146443071	ENSMUSSNP2540326	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27920562					SNP	A	A	T	A	T	T	T	T	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053286	NES09390681	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63291814 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Gm69532	predicted gene, 69532	120 bp upstream
Rr593533	regulatory region 593533	1483 bp distal
Rr593534	regulatory region 593534	within coordinates
Rr593535	regulatory region 593535	897 bp proximal