rs27920458 SNP Detail

Summary

• ID
  rs27920458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63321464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC TCAGCTCCTT ACCTCACTAG
  K
  ACTACACCAC CATCCTGCCG GCCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38053178	NES09389661	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	T	G	T		G	G		G
ss321145089	CHEV_4_63064261	CHEVERUD	SCREENING_POP	f	SNP										T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27920458					SNP	G	T	G	T	G	T	T	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053178	NES09389661	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63321464 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akna	AT-hook transcription factor			Intron
				mRNA-UTR
Gm52742	predicted gene, 52742			1101 bp downstream
Rr593542	regulatory region 593542			117 bp proximal
Rr593543	regulatory region 593543			1618 bp proximal
Tssr42040	transcription start site region 42040			1526 bp upstream
Tssr42041	transcription start site region 42041			18 bp downstream
Tssr42042	transcription start site region 42042			42 bp downstream
Tssr42043	transcription start site region 42043			50 bp downstream
Tssr42044	transcription start site region 42044			103 bp downstream
Tssr42045	transcription start site region 42045			134 bp downstream