rs27920457 SNP Detail

Summary

• ID
  rs27920457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63321831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GAGTTTGAGA CCACCTCAGT
  Y
  GCAACCACAA CCGTGCTTGT ACGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38053177	NES09389662	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	T		T	C	T		T
ss45716173	mCV24479169	ABI	CRAMUS_MOUSE	f	SNP		C						T	T
ss146443583	ENSMUSSNP6110870	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321145091	CHEV_4_63064628	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27920457					SNP	C	C	T	C	T	C	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053177	NES09389662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63321831 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Gm52742	predicted gene, 52742	1468 bp downstream
Rr593542	regulatory region 593542	within coordinates
Rr593543	regulatory region 593543	1251 bp proximal
Tssr42040	transcription start site region 42040	1893 bp upstream
Tssr42041	transcription start site region 42041	335 bp upstream
Tssr42042	transcription start site region 42042	320 bp upstream
Tssr42043	transcription start site region 42043	308 bp upstream
Tssr42044	transcription start site region 42044	244 bp upstream
Tssr42045	transcription start site region 42045	218 bp upstream