rs27920454 SNP Detail

Summary

• ID
  rs27920454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63323172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTGCTGG CACTGTGACC TCAGTGGCTA GAGCCATGGT
  TTTCCTTTCT GTGGAACAGG GCTAACCAGA GTGGCCACTG CCCTGGAGAG GCTGCTGTCA
  R
  TTCCATGACA GACGGCCTGC CCAGTGTGCA GTAAGGGACC TTAGGACCTA TGTCATCACC
  ATAGTTTCTG CCCCCGGGTC TCCTTAGGTG GGAGAGTCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38053174	NES09389665	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27920454					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053174	NES09389665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63323172 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Rr593542	regulatory region 593542	1091 bp distal
Rr593543	regulatory region 593543	within coordinates
Tssr42041	transcription start site region 42041	1676 bp upstream
Tssr42042	transcription start site region 42042	1661 bp upstream
Tssr42043	transcription start site region 42043	1649 bp upstream
Tssr42044	transcription start site region 42044	1585 bp upstream
Tssr42045	transcription start site region 42045	1559 bp upstream