rs27920452 SNP Detail

Summary

• ID
  rs27920452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63323460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GGGCTCCCTT TGCAGTCCCC
  Y
  GGCGACTATG GAACAGAGCC AAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38053172	NES09389667	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C		C	C	T	C	C
ss45624018	mCV24478884	ABI	CRAMUS_MOUSE	f	SNP	T	C				C	C
ss146443617	ENSMUSSNP179569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27920452					SNP	T	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053172	NES09389667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63323460 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Rr593542	regulatory region 593542	1379 bp distal
Rr593543	regulatory region 593543	within coordinates
Tssr42041	transcription start site region 42041	1964 bp upstream
Tssr42042	transcription start site region 42042	1949 bp upstream
Tssr42043	transcription start site region 42043	1937 bp upstream
Tssr42044	transcription start site region 42044	1873 bp upstream
Tssr42045	transcription start site region 42045	1847 bp upstream