rs27920007 SNP Detail

Summary

• ID
  rs27920007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:65757086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGCACA CACACACACA
  CACACACACA CACACACACA CACACACACA GATGTAGATA TATGTTCTGT TCATTGTGAC
  CATGACAGTT AGTATTGGTA ATTAAGACTG GAATAAAAGA ACCCACATTT GCCTAGTCCA
  GATTACCAGG AAAAGTGTAA TGATCAGGCA AACAGATGCC TTTGAAGCCT CCTTATTTGG
  Y
  GAGTTTATTG TGACTCGGTA TACTCTGACA TTGTGCAAAG ACATAAGTCT TTTCCACTAC
  GCCCCTGGCA CAGCACAGTC AGGGCTGATA CAGTTCATCA AGGCAAGGAG TGCATGCCAG
  TGAGAACAGA TCCTGTTCGT AACAGATGAT GTTGCTACTC ACACCTCAGC AGATAGGAGG
  CAGAAAAACT GGGCTGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38045040	NES09379586	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27920007					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38045040	NES09379586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:65757086 () rs orientation: forward

Symbol	Name	Function Class
Astn2	astrotactin 2	Intron
Rr593736	regulatory region 593736	within coordinates
Rr593737	regulatory region 593737	852 bp proximal