rs27920005 SNP Detail

Summary

• ID
  rs27920005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:65757620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCAAAC AAATTAAATC
  ATAACAGTTT CTTTAAAACT TTCAAAGACA AACAGGCTCA CAGGAATAAA CACAAGATGG
  ACACTGTAGT TTCAATCTTG AGATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGATT
  GCTCCTCTGC AATTGGTGAA AAAGTCAAGC TCCTTGTTTT GGCTCTTTGT GATCATAAAA
  Y
  CCAGCGAATG CCCCTTTCAG TCCTTTGAAT GCTCTCCAGG GTACCATGTT TTGTAGAGAA
  TGAGAGTGAT GACCAGTTGT CTGAAATAAT CTCTGGCCCT TGCCTTGGAG GCTTCATCCC
  CCCACCACCT CCCTTCTTCT AGTCTTGGCT ATTTCAGGAA ACTGAAAAAG ACAGCCTAGG
  GAGCTAATCC TGGGCTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38045038	NES09379516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27920005					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38045038	NES09379516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:65757620 () rs orientation: forward

Symbol	Name	Function Class
Astn2	astrotactin 2	Intron
Rr593736	regulatory region 593736	within coordinates
Rr593737	regulatory region 593737	318 bp proximal