rs27919270 SNP Detail

Summary

• ID
  rs27919270
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63867798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGCTG GTACCAGACA
  CCAACACAAA GCCTGCCTGC CAGCACACAC TGGCATCCCC AATGCTCCTG AGCTGGAAGG
  GTATGAATGG GTGAGATACA CACCTTTCTA GTGAACAATT ACACTTCTTA GAGAGCAAGG
  CTAACTATGC CAGGCCTGGG AGCAGTGTCT TCAGTAACTC TCAGCCATAG TCTGTGGAGT
  M
  ACCTTCACCT CTGTCCCTTA CCCTCTTCAC CCCTGTCATC CAGCACAGGT CTCACCTTGA
  CCTCACTACT AGGCCTCTTA CTCAGCACAG TCACCAAGAA AGGGTTCCTT ATCTATCCTA
  GAAGTGAAGA TTCTGACACT CAGGACCCTC CTGTCACCCT GTTCCCAGGT GAATGAAGCC
  TCTTTTCAGC TTCTCACATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38051205	NES09387178	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27919270					SNP	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051205	NES09387178	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63867798 () rs orientation: forward

Symbol	Name	Function Class
Rr593626	regulatory region 593626	963 bp distal
Rr593627	regulatory region 593627	1340 bp distal
Rr593628	regulatory region 593628	1302 bp distal
Rr593629	regulatory region 593629	558 bp proximal