rs27919269 SNP Detail

Summary

• ID
  rs27919269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63868239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAATAA ATCTCAGGTG
  ATTATCATAA GCAGCTTGGA ATAGGGGTAA GGTGTGGAGG AGCTCTCTGT GGTCCCAAAC
  CTATGAGCGC TACCTGTAGA CCTCACACAA CCCCATGTTG AATCTGCACA TCCAGCCAGA
  GCTCAGCTTC CTTCTCATGG ACCCCCGAAG CATCCTGTAT GCTCTCCTCC ATCCTATCTC
  Y
  AGCCCACTTC CACGCAGCAC CACCACATGG TTTGAGGGAA AAGGGTCTGA ACGTAATACT
  CCCCTTCCAG CAATTCTACA TTGAAGTCAG GAATCCCTTT TCTGGACCAG CGAGGGCTGT
  GTGACGGGTC TTGTTGCTCC GTGTAGCCTT ATGTGCTCTG TGTCTATGAT GGCTCACTTC
  CATTGTCAGC TTGGCTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38051204	NES09387179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27919269					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051204	NES09387179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63868239 () rs orientation: forward

Symbol	Name	Function Class
Rr593626	regulatory region 593626	1404 bp distal
Rr593627	regulatory region 593627	1781 bp distal
Rr593628	regulatory region 593628	1743 bp distal
Rr593629	regulatory region 593629	117 bp proximal