rs27910448 SNP Detail

Summary

• ID
  rs27910448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61729664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTTGTA ACTATGCATG
  TGTAGCTCTG TCAAGCTCAT CTATGTCTGA AAGAGTAAGA ACTTAACCAC AGTAGACACC
  TGGACTTTGT TGAAGCTTAA GAAATTGGTT GAGCACTCAC AGTGCAAGTG CAGCTAGGGC
  ACGATTGCCC TCTACTGGCC AAGCTGAGTG TGGCACTGTC TCCTACAGCC AAACTGCTGG
  R
  GCTTCCTTTG TTTGTGCCTG TTAGGTTTAT GCTCTGTGTA TACATATTAC ATTTATATGT
  ATATTTTGAA GCCAGTAGCT GAAGAGCTAT AGCACAGAAC ATGTGCTCAT TATAGTCCCT
  TTTAAAAATA GAAAAATTGC GTCTGGAGAG ATAGCTCAGT GTTAAGAGCA CTTGATGCCC
  TCACATACGA CCTGAATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38057776	NES09404488	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss146431331	ENSMUSSNP461183	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27910448					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38057776	NES09404488	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61729664 () rs orientation: forward

Symbol	Name	Function Class
Rr593236	regulatory region 593236	38 bp distal