rs27905419 SNP Detail

Summary

• ID
  rs27905419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63186516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTCTG TTCTGACTTG
  CTACTGCTGC TGCTCACAGT GTCTCTTTGG GAGGTAGGAA AACAGACTCC AGGTCAAGGT
  TACACACAAT GCAGGAGAAG GTTGGGGCTT GATTGGAGCC CATAACCTTC AGCTTCCATT
  CCAGGATCCC TTCCCTGCCT TCTTTTGGTC CACGCTCTGG GTGTGTCTAC AGTTTGCAGT
  Y
  TTGTGCCTAC AAGGTTTCCA AAGAGCCTCT CTTTTCTGCA GCCCCCCCTT GCCCTGGTCA
  TTGTCAACCT CTCTTCTCCT GTCAACCAAG CTTCTCCTGC AGCTTCCCTT GCCCCATGTC
  CTCTTGTGGC CACTGTCAGT CTCTCCTTTC CTTGTTTTCA GATTCTCTTC TCTGCCAGGA
  TGAAATATCT CTCACCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053842	NES09394594	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27905419					SNP	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053842	NES09394594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63186516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col27a1	collagen, type XXVII, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr593508	regulatory region 593508			695 bp distal
Rr593509	regulatory region 593509			567 bp proximal