rs27896607 SNP Detail

Summary

• ID
  rs27896607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67393383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTAA ACGATGTTTA
  CTTATACTGA GAAAATGTAC ATCACCCTGG AAGCACAAAT GATGAGTTTT CACAAAGATA
  GTTGCCACCA GGCAAGGGGG AAAGAAATTG TTATCAGCAC ACAGCAATCT CATGTTCAAC
  CCAAGACCAT TTTTTATTCT GTTGAGCAGT TCACTGTCCA TCCCAATTCA CTTTAATACT
  K
  TCAAAATCTG CTTACATTTG TTCGATTTCT TTCTAGAACC AAAGCAATGA TACTTAAATA
  TTCTATTTAT TACACTGCTT ATTTTGCTTG TGGAGTTTTT CAGGTTGTTT AATATGTTGA
  TAATTTTTTT TCATTCCTAA ATCTCTTATT ATGTATGTTT CACAAGTAAT GGTTTCTTCT
  TCTCTTTTGT GAGTGTAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38038348	NES09377118	PERLEGEN	MM_PANEL2	f	SNP	T			G	G	G	G		G	G	G	T	G	G
ss45608731	mCV24086214	ABI	CRAMUS_MOUSE	f	SNP		T	G					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27896607					SNP	T	T	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038348	NES09377118	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67393383 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	1967 bp proximal